Heuristic Approach for Gene Prediction in Prokaryotes (Reload this page)
Reference:Besemer J. and Borodovsky M., Heuristic approach to deriving models for gene finding, NAR, 1999, Vol. 27, No. 19, pp. 3911-3920.
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The models used by GeneMark.hmm 2.0 and GeneMark 2.4 are derived from parameters measured from the input sequences and knowledge gained through the study of various bacterial genomes.These models have been shown to accurately predict genes in bacterial, viral and plasmid DNA sequences. Please note that email is the only way to receive output for sequences larger than 1 MB.

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Listing of previous updates

Gene Prediction Results

Information on input sequence

Sequence title: Mon Aug 26 20:23:44 EDT 2002
Length:         39229 bp
G+C percentage: 46.25 %

Parse predicted by GeneMark.hmm 2.0 

GeneMark.hmm PROKARYOTIC (Version 2.1)
Sequence file name: sequence,	RBS: N
Model file name: heuristic_no_rbs.mat
Model organism: Heuristic_model
Mon Aug 26 20:23:54 2002

Predicted genes
   Gene    Strand    LeftEnd    RightEnd       Gene     Class
    #                                         Length
    1        +          <3         290          288        1
    2        +         350        1198          849        1
    3        +        1300        2115          816        1
    4        -        1930        3276         1347        1
    5        -        3457        4023          567        1
    6        -        4020        4430          411        1
    7        -        4432        5025          594        1
    8        -        5117        6739         1623        1
    9        -        6741        7232          492        1
   10        +        8103        8258          156        1
   11        +        8255        8845          591        1
   12        +        8869        9297          429        1
   13        +        9600        9749          150        1
   14        +        9749       10417          669        1
   15        +       10414       10728          315        1
   16        +       10777       11010          234        1
   17        +       11003       11371          369        1
   18        +       11364       11612          249        1
   19        +       11600       11836          237        1
   20        +       11838       12026          189        1
   21        +       12156       13709         1554        1
   22        +       13714       13935          222        1
   23        +       13940       14287          348        1
   24        +       14271       16013         1743        1
   25        +       16030       16608          579        1
   26        +       16601       17041          441        1
   27        +       17034       17897          864        1
   28        +       17887       18291          405        1
   29        +       18284       18469          186        1
   30        +       18462       18767          306        1
   31        +       18764       18946          183        1
   32        +       18943       20958         2016        1
   33        +       21067       21303          237        1
   34        +       21287       21736          450        1
   35        +       22043       22441          399        1
   36        +       22442       22630          189        1
   37        -       22686       22826          141        1
   38        -       22831       23085          255        1
   39        -       23075       23335          261        1
   40        -       23328       23666          339        1
   41        -       23666       23857          192        1
   42        -       23838       24440          603        1
   43        -       24440       25222          783        1
   44        -       25371       27128         1758        1
   45        -       27131       31585         4455        1
   46        -       31600       32034          435        1
   47        -       32036       32494          459        1
   48        -       32472       34619         2148        1
   49        -       34588       34905          318        1
   50        -       34892       35641          750        1
   51        -       35643       36215          573        1
   52        -       36333       37274          942        1
   53        -       37287       38054          768        1
   54        -       38057       38299          243        1
   55        -       38296       38595          300        1
   56        -       38606       39127          522        1
Input Sequence
Title (optional):


Sequence:


Sequence File upload:


Use alternate genetic code:
      Mycoplasma (TGA = Trp)

Output Options
Email Address: (required for graphical output or sequences longer than 1000000 bp)


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Print GeneMark 2.4 predictions in addition to GeneMark.hmm predictions
Translate predicted genes into protein

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